Publications

C.B. Markegard, C.P. Gallivan, D.D. Cheng, and H.D. Nguyen, "Effects of Concentration and Temperature on DNA Hybridization by Two Closely Related Sequences via Large-Scale Coarse-Grained Simulations," J. Phys. Chem. B, Just Accepted Manuscript

C.B. Markegard, A. Mazaheripour, J.M. Jocson, A.M. Burke, M.N. Dickson, A.A. Gorodetsky and H.D. Nguyen, “Molecular Dynamics Simulations of Perylenediimide DNA Base Surrogates,” J. Phys. Chem. B, 119(35): 11459–11465 (2015)

C.B. Markegard, I.W. Fu, K. Reddy and H.D. Nguyen, "Coarse-Grained Simulation Study of Sequence Effects on DNA Hybridization in a Concentrated Environment," J. Phys. Chem. B, 119(5): 1823–1834 (2015)

I.W. Fu, C.B. Markegard and H.D. Nguyen, “Solvent Effects on Kinetic Mechanisms of Self-Assembly by Peptide Amphiphiles via Molecular Dynamics Simulations,” Langmuir, 31(1): 315–324 (2015)

B.K. Chu, I.W. Fu, C.B. Markegard, S.E. Choi, and H.D. Nguyen, "A tail of two peptide amphiphiles: Effect of conjugation with hydrophobic polymer on folding of peptide sequences," Biomacromolecules, 15 (9), 3313-3320. (2014)

I.W. Fu, C.B. Markegard, B.K. Chu, and H.D Nguyen, "Role of hydrophobicity on self-assembly by peptide amphiphiles via molecular dynamics simulations", Langmuir 30 (26), 7745-7754 (2014)

I.W. Fu, C.B. Markegard, B.K. Chu, and H.D. Nguyen, "The Role of Electrostatics and Temperature on Morphological Transitions of Hydrogel Nanostructures Self‐Assembled by Peptide Amphiphiles Via Molecular Dynamics Simulations," Advanced healthcare materials 2 (10), 1388-1400 (2013)